Description Usage Arguments Value
View source: R/slidingWindowSubgroupDetection.R
Detect subgroups of proteins within a matrix of protein intensity traces by sliding a window across the SEC dimension. Within each window, the traces that correlate well are clustered together.
1 2 | detectSubgroupsSW(trace.mat, protein.names, corr.cutoff = 0.75,
window.size = 15, with.plot = F)
|
trace.mat |
A numeric matrix where rows correspond to the different traces. |
window.size |
Size of the window. Numeric. |
start.window.idx |
Column index where the window starts. |
score |
The type of correlation to use. A string with value 'pearson' or 'diff'. |
The mean correlation between all traces within this window.
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