detectSubgroupsSW: Detect subgroups of proteins within a matrix of protein...

In hafenr/MACode: Functions and code snippets for my master thesis

Description

Detect subgroups of proteins within a matrix of protein intensity traces by sliding a window across the SEC dimension. Within each window, the traces that correlate well are clustered together.

Usage

detectSubgroupsSW(trace.mat, protein.names, corr.cutoff = 0.75,
  window.size = 15, with.plot = F)

Arguments

trace.mat	A numeric matrix where rows correspond to the different traces.
window.size	Size of the window. Numeric.
start.window.idx	Column index where the window starts.
score	The type of correlation to use. A string with value 'pearson' or 'diff'.

Value

The mean correlation between all traces within this window.

hafenr/MACode documentation built on May 17, 2019, 2:24 p.m.