Description Usage Arguments Value Examples
View source: R/dataImputation.R
Furthermore, missing protein molecular weights are also added.
1 2 | imputeProteinConcentrations(peptide.traces, protein.conc.estimates,
protein.ids.file)
|
peptide.traces |
A long list format data.table of peptide traces. |
protein.conc.estimates |
A data.table holding the existing protein concentrations. It has the format:
|
protein.ids.file |
A file path where the protein ids are stored for which a manual uniprot lookup has to be made. |
A data.table holding all proteins with their molecular weight and concentration.
1 2 3 4 | peptide.traces <- widePepTracesToLong(e4.peptide.traces.wide)
protein.ids.file <- '~/Desktop/proteinmw.txt'
imputeProteinConcentrations(peptide.traces, HEK293.protein.conc.estimates,
protein.ids.file)
|
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