annotateComplexFeatures: Annotate complex features using the manually annotated CORUM...

In hafenr/MACode: Functions and code snippets for my master thesis

Description

Each row will get an additional column 'is_true_positive'.

Usage

annotateComplexFeatures(detected.features, manual.annotations,
  with.sec = TRUE, feature.vicinity.tol = 5)

Arguments

detected.features	A data.table holding the features as output by cprophet PC.
manual.annotations	A data.table with the columns 'complex_id', 'rt'. The built in data sets like 'manual.annotation.full' can be used here.
feature.vicinity.tol	A numeric value that specifies how near an experimental feature has to be to a manually annotated one to count as a true positive

Value

The same data.table with a new column 'is_true_positive'.

hafenr/MACode documentation built on May 17, 2019, 2:24 p.m.