imputePartialPeakgroupCompletness: Estimate the completness of a peak group that was annotated...

In hafenr/MACode: Functions and code snippets for my master thesis

Description

Estimate the completness of a peak group that was annotated as being partially complete.

Usage

imputePartialPeakgroupCompletness(manual.annotations.partial, protein.traces,
  window.size = 14, corr.cutoff = 0.7)

Arguments

manual.annotations.partial	A manual annotation data.table
protein.traces	Wide format protein traces with columns: complex_id protein_id complex_name additional columns for each sec rt
window.size	The window in SEC that is considered around each manually annotated RT.
corr.cutoff	Above which value a group of traces is considered to be well correlated.

Examples

peptraces <- widePepTracesToLong(e4.peptide.traces.wide.filtered)
prottraces <- produceProteinTraces(peptraces)
prottraces.wc <- annotateProteinTraces(prottraces, corum.complex.protein.assoc)
imputePartialPeakgroupCompletness(manual.annotations.partial, prottraces.wc)

hafenr/MACode documentation built on May 17, 2019, 2:24 p.m.