Description Usage Arguments Examples
View source: R/imputePartialPeakgroupCompleteness.R
Estimate the completness of a peak group that was annotated as being partially complete.
1 2 | imputePartialPeakgroupCompletness(manual.annotations.partial, protein.traces,
window.size = 14, corr.cutoff = 0.7)
|
manual.annotations.partial |
A manual annotation data.table |
protein.traces |
Wide format protein traces with columns:
|
window.size |
The window in SEC that is considered around each manually annotated RT. |
corr.cutoff |
Above which value a group of traces is considered to be well correlated. |
1 2 3 4 | peptraces <- widePepTracesToLong(e4.peptide.traces.wide.filtered)
prottraces <- produceProteinTraces(peptraces)
prottraces.wc <- annotateProteinTraces(prottraces, corum.complex.protein.assoc)
imputePartialPeakgroupCompletness(manual.annotations.partial, prottraces.wc)
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