haibol2016/InPAS: Identify Novel Alternative PolyAdenylation Sites (PAS) from RNA-seq data
Alternative polyadenylation (APA) is one of the important post- transcriptional regulation mechanisms which occurs in most human genes. InPAS facilitates the discovery of novel APA sites and the differential usage of APA sites from RNA-Seq data. It leverages cleanUpdTSeq to fine tune identified APA sites by removing false sites.
Getting started
Browse package contents
Package details |
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| Bioconductor views | Alternative Polyadenylation Differential Polyadenylation Site Usage Gene Regulation RNA-seq Transcription |
| Maintainer | Jianhong Ou <jianhong.ou@duke.edu> |
| License | GPL (>= 2) |
| Version | 2.3.0 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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