UTR3eSet-class: UTR3eSet-class and its methods

In haibol2016/InPAS: Identify Novel Alternative PolyAdenylation Sites (PAS) from RNA-seq data

UTR3eSet-class and its methods

Description

An object of class UTR3eSet representing the results of 3' UTR usage; methods for constructing, showing, getting and setting attributes of objects; methods for coercing object of other class to UTR3eSet objects.

Objects from the Class

Objects can be created by calls of the form new("UTR3eSet", ...)

Objects can be created by calls of the form new("UTR3eSet", ...).

Slots

usage

Object of class "GRanges"

PDUI

Object of class "matrix"

PDUI.log2

Object of class "matrix"

short

Object of class "matrix"

long

Object of class "matrix"

signals

Object of class "list"

testRes

Object of class "matrix"

UTR3eSet-class methods

$

signature(x = "UTR3eSet"): ...

$<-

signature(x = "UTR3eSet"): ...

coerce

signature(from = "UTR3eSet", to = "ExpressionSet"): ...

coerce

signature(from = "UTR3eSet", to = "GRanges"): ...

show

signature(object = "UTR3eSet"): ...

Author(s)

Jianhong Ou

Jianhong Ou

See Also

GRanges

haibol2016/InPAS documentation built on Feb. 21, 2025, 6:26 p.m.