View source: R/23.run_limmaAnalysis.R
run_limmaAnalysis | R Documentation |
use limma to analyze the PDUI
run_limmaAnalysis( UTR3eset, design, contrast.matrix, coef = 1, robust = FALSE, ... )
UTR3eset |
An object of UTR3eSet, output of |
design |
A design matrix of the experiment, with rows corresponding to
arrays and columns to coefficients to be estimated. Defaults to the unit
vector meaning that the arrays are treated as replicates. see
|
contrast.matrix |
A numeric matrix with rows corresponding to coefficients
in fit and columns containing contrasts. May be a vector if there is only
one contrast. see |
coef |
An integer(1) vector specifying which coefficient or a character(1)
vector specifying which contrast of the linear model is to test. see more
|
robust |
A logical(1) vector,indicating whether the estimation of the empirical Bayes prior parameters be robustified against outlier sample variances? |
... |
other arguments which are passed to |
fit results of eBayes by limma. It is an object of class
limma::MArrayLM containing everything found by fit. see
limma::eBayes()
Jianhong Ou
run_singleSampleAnalysis()
, run_singleGroupAnalysis()
, run_fisherExactTest()
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