Files in haneylab/geNet
Generating large network of co-occurring genes
DESCRIPTION
Introduction_geNet/Bibliography_references.bib
Introduction_geNet/Figures/geNet_package_summary.png
Introduction_geNet/Figures/visualization_framework_scheme.png
Introduction_geNet/geNet_functions.pdf
Introduction_geNet/introduction_to_geNet.aux
Introduction_geNet/introduction_to_geNet.log
Introduction_geNet/introduction_to_geNet.out
Introduction_geNet/introduction_to_geNet.pdf
Introduction_geNet/introduction_to_geNet.synctex.gz
Introduction_geNet/introduction_to_geNet.tex
Introduction_geNet/introduction_to_geNet.toc
NAMESPACE
R/checking_and_pre-processing.R
R/format_score_df.R
R/geNet_algorithm.R
R/gen_igraph_network.R
R/gen_weights_edges.R
R/get_info_genes.R
R/get_layers_values.R
R/mod_layers.R
R/plot_visnetwork.R
R/visnetwork_conv.R
R/visualization_functions.R
README.md
inst/extdata/bn_df_test.csv
inst/extdata/extra_info_df_test.csv
man/check_input_geNet.Rd
man/check_input_visualization.Rd
man/contract_network.Rd
man/export_geNet_result.Rd
man/filter_id.Rd
man/final_score.Rd
man/geNet.Rd
man/gen_network_obj.Rd
man/gen_visnetwork_data.Rd
man/generate_df_scores.Rd
man/generate_final_df.Rd
man/generate_freqs_genes.Rd
man/get_colors_based_on_gene_ID.Rd
man/get_colors_based_on_size.Rd
man/get_colors_based_on_strains.Rd
man/get_gene_ID_based_on_tooltip.Rd
man/get_group_names_based_on_n_nodes.Rd
man/get_group_names_based_on_tooltip.Rd
man/get_groups_based_on_annotation.Rd
man/get_groups_based_on_clustering.Rd
man/get_groups_based_on_gene_ID.Rd
man/get_legend_df.Rd
man/get_mappings.Rd
man/get_new_colors_based_on_groups.Rd
man/mod_color_layer.Rd
man/mod_group_layer.Rd
man/mod_group_names.Rd
man/mod_size_layer.Rd
man/mod_tooltip_visnetwork.Rd
man/plot_visnetwork.Rd
man/visualize_network.Rd
