final_score: function to format the final df of scores
In haneylab/geNet: Generating large network of co-occurring genes

Description Usage Arguments Value Examples

function to format the final df of scores. The adjustment and filtering steps are executed. It is automatically called by the geNet() function

final_score(
  final_df_phi_score,
  sel_weight = "coeff",
  pval_thr_pos = 0.01,
  pval_thr_neg = 0.1
)

`final_df_phi_score`	the dataframe of scores generated by the generate_final_df() function. Mandatory argument
`sel_weight`	select the type of weights of the edges. Possible values: logpvalue: choose the negative log-pvalues as weights of the edges coeff: choose the correlation coefficients as weights of the edges Default to "coeff"
`pval_thr_pos`	threhold p-value positive edges. Default to 0.01.
`pval_thr_neg`	threshold p-value negative edges. Default to 0.1.

Object of class "ffdf", containing the connections between the nodes. The connections have been filtered and correctly formatted to be converted in an igraph object