contract_network: contract_network

In haneylab/geNet: Generating large network of co-occurring genes

Description

function to contract the visnetwork dataframe. It is automatically called by the plot_visnetwork() function if contract_net=T.

Usage

contract_network(data, seed = 123, show_label = F, show_legend = T)

Arguments

data	visnetwork dataframe generated by the geNet algorithm. Mandatory argument.
seed	set seed of the nodes
show_label	should the labels of the nodes be visible? default to False
show_legend	should the legend be visible? default to True

Value

list of two objects:

• visnet: object of class "visNetwork" generated from the contracted data.

• data_contracted: a compressed version of the input data object. It is generated by contracting the nodes of each cluster in one vertex.

This dataset reports only the nodes contained in each cluster and the connections between the clusters

haneylab/geNet documentation built on Oct. 4, 2020, 8:40 a.m.