plot_visnetwork: plot_visnetwork

In haneylab/geNet: Generating large network of co-occurring genes

Description

function to plot the visnetwork object based on the data input

Usage

plot_visnetwork(
  data,
  show_label = F,
  show_legend = T,
  seed = 123,
  name_net = "None",
  show_negative = F,
  contract_net = T,
  size_opt = "fixed"
)

Arguments

data	list of two ffdf objects generated by the geNet algorithm. Mandatory argument.
show_label	show the labels of the nodes?
show_legend	show the legend of groups?
seed	set the seed of the current instance
name_net	name of the network
show_negative	show negative edges?
contract_net	Should the network be contracted? Default to True
size_opt	fixed: the size of the node is equal to 8 (size layer values ignored) size_opt: the size of the node is proportional to the size layer values Default to "fixed". Note: if the there are too many nodes the size of the node is reduced regardless the option specified by the user.

Value

data: data object modified with the new size layer

Examples

## Not run:  
plot_visnetwork(data,show_label=F,
show_legend=T,seed=123,name_net="None",
show_negative=F,contract_net=T,
size_opt="fixed")

## End(Not run)

haneylab/geNet documentation built on Oct. 4, 2020, 8:40 a.m.