export_geNet_result: Export geNet results

In haneylab/geNet: Generating large network of co-occurring genes

Description

function to export the geNet output. It is automatically called by the geNet() function if export_results=T

Usage

export_geNet_result(geNet_output, out_directory, format = "csv")

Arguments

geNet_output	the object generated by the geNet function. It is a list of two ffdf objects. nodes: ffdf object containing the information about the nodes edges: ffdf object containing the information about the edges
out_directory	the directory to write the output
format	the user can export the geNet output in .csv format or in .ffdata format. In both cases, two files are generated. One containing the nodes information (e.g., clustering association), and the other one containing edges information (e.g.,connections weight). Default to "csv".

Value

In case of the csv format, two csv files are generated in the output directory

• nodes_geNet_output.csv: it contains the information about the nodes

• edges_geNet_output.csv: it contains the information about the edges

Examples

## Not run: export_geNet_result(geNet_output,out_directory="./",format="csv") 
# export output in current working directory "./"

## End(Not run)

haneylab/geNet documentation built on Oct. 4, 2020, 8:40 a.m.