budgetCalculation.libPrepCell: Calculate total cost dependent on parameters for 10X design...

In heiniglab/scPower: Experimental design framework for scRNAseq population studies (eQTL and DE)

Calculate total cost dependent on parameters for 10X design using library preparation costs per cell

Description

Calculate total cost dependent on parameters for 10X design using library preparation costs per cell

Usage

budgetCalculation.libPrepCell(
  nSamples,
  nCells,
  readDepth,
  prepCostCell,
  costFlowCell,
  readsPerFlowcell,
  rounding = FALSE
)

Arguments

nSamples	Number of samples
nCells	Cells per individual
readDepth	Read depth per cell
prepCostCell	Library preparation costs per cell
costFlowCell	Cost of one flow cells for sequencing
readsPerFlowcell	Number reads that can be sequenced with one flow cell
rounding	Rounds up the number of used kits and flow cells (which might give a more realistic estimation of costs)

Value

Total experimental cost dependent on the parameters

heiniglab/scPower documentation built on Jan. 9, 2025, 12:13 p.m.