cellsBudgetCalculation | R Documentation |
Estimate possible number of cells per individual depending on the total cost and the other parameters for 10X design
cellsBudgetCalculation(
nSamples,
readDepth,
totalCost,
costKit,
samplesPerLane,
costFlowCell,
readsPerFlowcell,
reactionsPerKit = 6
)
nSamples |
Number of samples |
readDepth |
Read depth per cell |
totalCost |
Experimental budget |
costKit |
Cost for one 10X kit |
samplesPerLane |
Number of individuals sequenced per lane |
costFlowCell |
Cost of one flow cells for sequencing |
readsPerFlowcell |
Number reads that can be sequenced with one flow cell |
reactionsPerKit |
Reactions (=lanes) per kit, defines the total number of tested individuals per kit |
Cells per individual that can be measured with this budget and other parameters
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