budgetCalculation.restrictedDoublets: Calculate total cost dependent on parameters (adaptation with...

In heiniglab/scPower: Experimental design framework for scRNAseq population studies (eQTL and DE)

Calculate total cost dependent on parameters (adaptation with cells per lane instead of samples)

Description

Calculate total cost dependent on parameters (adaptation with cells per lane instead of samples)

Usage

budgetCalculation.restrictedDoublets(
  nSamples,
  nCells,
  readDepth,
  costKit,
  cellsPerLane,
  costFlowCell,
  readsPerFlowcell,
  rounding = FALSE,
  reactionsPerKit = 6
)

Arguments

nSamples	Number of samples
nCells	Cells per individual
readDepth	Read depth per cell
costKit	Cost for one 10X kit
cellsPerLane	Number of cells sequenced per lane
costFlowCell	Cost of one flow cells for sequencing
readsPerFlowcell	Number reads that can be sequenced with one flow cell
rounding	Rounds up the number of used kits and flow cells (which might give a more realistic estimation of costs)
reactionsPerKit	Reactions (=lanes) per kit, defines the total number of tested individuals per kit

Value

Total experimental cost dependent on the parameters

heiniglab/scPower documentation built on Jan. 9, 2025, 12:13 p.m.