cellsBudgetCalculation.libPrepCell: Estimate possible number of cells per individual depending on...
In heiniglab/scPower: Experimental design framework for scRNAseq population studies (eQTL and DE)

cellsBudgetCalculation.libPrepCell

R Documentation

Estimate possible number of cells per individual depending on the total cost, using library preparation costs per cell

Estimate possible number of cells per individual depending on the total cost, using library preparation costs per cell

cellsBudgetCalculation.libPrepCell(
  nSamples,
  readDepth,
  totalCost,
  prepCostCell,
  costFlowCell,
  readsPerFlowcell
)

`nSamples`	Number of samples
`readDepth`	Read depth per cell
`totalCost`	Experimental budget
`prepCostCell`	Library preparation costs per cell
`costFlowCell`	Cost of one flow cells for sequencing
`readsPerFlowcell`	Number reads that can be sequenced with one flow cell

Cells per individual that can be measured with this budget and other parameters

heiniglab/scPower documentation built on Jan. 9, 2025, 12:13 p.m.

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