R/ConsensusPeaks.R

In helen-zhu/DPDE4PM: A Method for Peak Merging Across Biological Replicates

ConsensusPeaks = function(
  GENES = "all",
  PEAKS,
  RNA.OR.DNA = "",
  METHOD = c("dpc", "union", "corces"),
  GTF,
  ANNOTATION,
  RESOLUTION = 50,
  DP.ITERATIONS = 1000,
  WEIGHT.THRESHOLD = 0.2,
  N.SD = 1,
  OUTPUTDIR =".",
  PLOT.RESULT=F,
  WRITE.OUTPUT=T,
  OUTPUT.TAG="",
  ALPHA.PRIORS = c(1,2),
  SEED = 123
) {
  
}