Man pages for hettling/BiGGR
Constraint based modeling in R using metabolic reconstruction databases

BiGGR-internalInternal BiGGR functions and objects
BiGGR-packageCreates an interface to the BiGG database, provides a...
buildSBMLFromBiGGBuild an SBML model from a given reactions file obtained from...
buildSBMLFromGenesBuild an SBML model for specific genes in a given database
buildSBMLFromPathwaysBuild an SBML model for specific pathway(s) in a given...
buildSBMLFromReactionIDsBuild an SBML model for specific reactions in a given...
createLIMFromBiGGCreate a LIM model object from a BiGG database file
createLIMFromSBMLCreate a LIM model object from an SBML file
E.coli_iAF1260Ecoli dataset with ORFs and thermodynamic information
E.coli_iJR904Ecoli genome-scale model
E.coli_textbookEcoli dataset from the BiGG database
extractGeneAssociationsExtract informations on genes from a given database
extractPathwaysExtract all pathways from given database
getPathwaysForSBMLExtract all pathways from a database that are relevant for a...
getRatesGet Optimized Rates
GlycolysisMetabolic reconstruction of Glycolysis pathway
gprMappingGPR mapping
gprMappingAvgGPR mapping ignoring AND & OR operators
H.pylori_ilT341H.pylori in silico genome-scale characterization of single...
H.sapiens_Recon1Reconstruction of human metabolism from the BiGG database
lying.tunell.dataDataset of in vivo cerebral metabolite uptake and release...
M.barkeri_iAF692Metabolic reconstruction of M.barkeri from the BiGG database
M.tuberculosis_iNJ661Metabolic reconstruction of M.tuberculosis from the BiGG...
P.putida_iJN746Metabolic reconstruction of P.putida from the BiGG database
Recon2Human metabolic reconstruction Recon2
rmvSpliceVariantRemove splicing variants from the database.
sampleFluxEnsembleSample a posterior ensemble of feasible flux configurations...
S.aureus_iSB619Metabolic reconstruction of S.aureus from the BiGG database
sbml2hyperdrawReturns a graph representation of an SBML model
S.cerevisiae_iND750Metabolic reconstruction of S.cerevisiae from the BiGG...
hettling/BiGGR documentation built on April 12, 2019, 3:09 p.m.