Recon2: Human metabolic reconstruction Recon2

In hettling/BiGGR: Constraint based modeling in R using metabolic reconstruction databases

Description

The dataset was generated by downloading the SBML file of the reconstruction (http://www.ebi.ac.uk/biomodels-main/MODEL1109130000) which was subsequently converted into an object of class SBML using the rsbml_read function from the rsbml package.

Usage

data(Recon2)

Format

An sbml object of class rsbml

Source

http://www.ebi.ac.uk/biomodels-main/MODEL1109130000

References

Thiele I, Swainston N, et al.,"A community-driven global reconstruction of human metabolism", Nature Biotechnology 31, 419-425 (2013), doi:10.1038/nbt.2488

Examples

## Not run: 
##The dataset was generated as follows:
##MODEL1109130000.xml was downloaded from http://www.ebi.ac.uk/biomodels-main/MODEL1109130000
##Recon2 <- rsbml_read("MODEL1109130000.xml") 

## End(Not run)

##load data and get all reaction IDs
data(Recon2)
model <- Recon2@model
##get all reaction identifiers
sapply(model@reactions, id)

hettling/BiGGR documentation built on April 17, 2020, 5:19 a.m.