hettling/BiGGR: Constraint based modeling in R using metabolic reconstruction databases

This package provides an interface to simulate metabolic reconstruction from the BiGG database(http://bigg.ucsd.edu/) and other metabolic reconstruction databases. The package facilitates flux balance analysis (FBA) and the sampling of feasible flux distributions. Metabolic networks and estimated fluxes can be visualized with hypergraphs.

Getting started

Package details

AuthorAnand K. Gavai, Hannes Hettling
Bioconductor views GraphAndNetwork Metabolomics Network Pathway Systems Biology Visualization
MaintainerAnand K. Gavai <anand.gavai@bioinformatics.nl>, Hannes Hettling <hannes.hettling@naturalis.nl>
Licensefile LICENSE
URL http://www.bioconductor.org/
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
hettling/BiGGR documentation built on April 17, 2020, 5:19 a.m.