xMakeGenesets: Function to prepare a gene_info RDS file

In hfang-bristol/XGR: Exploring Genomic Relations for Enhanced Interpretation Through Enrichment, Similarity, Network and Annotation Analysis

Function to prepare a gene_info RDS file

Description

xMakeGenesets is supposed to prepare a gene_info RDS file.

Usage

xMakeGenesets(
association.file = NULL,
set_info.file = NULL,
output.prefix = NULL,
output.dir = "./",
stamp = as.Date(Sys.time())
)

Arguments

association.file	an input file for association
set_info.file	an input file for set_info
output.prefix	a prefix for the output file
output.dir	the output directory
stamp	the stamp associated with this RDS file. By default it is the date when the file created

Value

a GS object

Note

None

See Also

xMakeGenesets

Examples

## Not run: 
GS <- xMakeGenesets(association.file="GENE2GOMF.txt",
set_info.file="GO.txt", output.prefix="org.Hs.egGOMF")

## End(Not run)

hfang-bristol/XGR documentation built on Feb. 4, 2023, 7:05 a.m.