Man pages for hhabra/Combiner
Method for Combining LC-MS Metabolomics Feature Measurements

adductdataRetrieve Adduct Annotations
adjustDataProcess and Filter Metabolomics Feature Lists
batchCombineStepwise Multi-batch LC-MS Alignment
calcScoresCompute Feature Similarity Scores
calcScoresParamList calcScores Defaults
combineDataObtain All Feature Data
combinedTableObtain Feature Alignment Report
combinerCheckObtain Errors for metabCombiner Object Checks
crossValFitCross Validation for Model Fits
datasetsObtain Dataset IDs
detectFieldsDetect metabData Input Columns
evaluateParamsEvaluate Similarity Score Parameters
featdataObtain Feature Metadata
filterAnchorsFilter Outlier Ordered Pairs
filteredRetrieve Filtered Features
filterRTFilter Features by Retention Time Range
fit_gamFit RT Projection Model With GAMs
fitgamParamList fit_gam Defaults
fit_loessFit RT Projection Model With LOESS
fitloessParamList fitLoess Defaults
getAnchorsGet Ordered Retention Time Pairs
getCoefficientsObtain Last-Used Score Coefficients
getDataGet Processed Dataset
getExtraGet Extra Data Column Names
getModelGet Fitted RT Model
getSamplesGet Sample Names From metabCombiner or metabData Object
getStatsGet Object Statistics
iddataRetrieve Feature Identities
identityAnchorSelectionSelect Matching Ids as Anchors
isCombinedTableDetermine 'combinedTable' Validity
isMetabCombinerDetermine if object is a valid metabCombiner object
isMetabDataDetermine validity of input metabData object
iterativeAnchorSelectionIterative Selection of Ordered Pairs
labelRowsAnnotate and Remove Report Rows
labelRowsParamList labelRows & reduceTable Defaults
metabBatchesThree LC-MS Metabolomics Batch Datasets
metabCombinemetabCombiner Wrapper Function
metabCombinerForm a metabCombiner object.
metabCombiner-class'metabCombiner' Combined Metabolomics Dataset Class
metabDataConstructor for the metabData object.
metabData-class'metabData' Single Metabolomics Dataset Class
mzdataRetrieve m/z Values
mzGroupBinning of mass spectral features in m/z dimension
nonmatchedGet Nonmatched Features
objectiveWeight Parameter Objective Function
opts.duplicateDuplicate Feature Detection Parameters
plasma2020 minute LC-MS Analysis of Human Plasma
plasma3030 minute LC-MS Analysis of Human Plasma
plot_fitPlot metabCombiner Fits
QdataRetrieve Relative Abundance Values
resolveRowsResolve Conflicting Alignment Subgroups
rtdataRetrieve Retention Time Values
scorePairsCalculate Pairwise Alignment Scores
selectAnchorsSelect Anchors for Nonlinear RT Model
selectAnchorsParamList selectAnchors Defaults
updateTablesUpdate 'metabCombiner' Objects
write2filePrint metabCombiner Report to File.
xObtain x & y Data Identifiers
hhabra/Combiner documentation built on April 24, 2023, 2:09 a.m.