fitloessParam | R Documentation |
List of default parameters for loess fitting step of main package workflow, See help(fit_loess) or ?fit_loess for more details.
fitloessParam( useID = FALSE, spans = seq(0.2, 0.3, by = 0.02), outlier = "MAD", coef = 2, iterFilter = 2, prop = 0.5, weights = 1, message = TRUE, rtx = c("min", "max"), rty = c("min", "max"), control = loess.control(surface = "direct", iterations = 10) )
useID |
choice of preserving identity-based anchors; default: FALSE |
spans |
values for span parameter which controls degree of smoothing |
outlier |
outlier filtering method (either "MAD" or "boxplot"); default: "MAD" |
coef |
outlier filtering coefficient; default: 2 |
iterFilter |
number of outlier filtering iterations; default: 2 |
prop |
minimum proportion of fits where a point can be a flagged outlier; default: 0.5 |
weights |
optional supplied weights to individual points; default: 1 |
message |
option to print progress message; default: TRUE |
rtx |
ordered pair of endpoints for rtx; default: ("min", "max") |
rty |
ordered pair of endpoints for rty; default: ("min", "max") |
control |
loess-specific control parameters; see: ?loess.control |
list of fit_loess parameters:
fit_loess
, metabCombine
fitParam <- fitloessParam(spans = c(0.2,0.25,0.3), outlier = "boxplot", iterFilter = 3, coef = 1.5, message = FALSE, control = loess.control(iterations = 4))
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