Qdata: Retrieve Relative Abundance Values

QDataR Documentation

Retrieve Relative Abundance Values

Description

This retrieves feature Q values from one or all constituent dataset features of a metabCombiner object. Alternatively, the average Q value can be retrieved.

Usage

QData(object, data = NULL, value = c("obs", "mean"))

## S4 method for signature 'metabCombiner'
QData(object, data = NULL, value = c("observed", "mean"))

Arguments

object

metabCombiner object

data

dataset identifier to extract information from; if NULL, extracts information from all datasets

value

Either "obs" (observed - default option) or "mean" average value

Value

data frame or vector of relative ranked abundance (Q) values

data(plasma30) data(plasma20)

p30 <- metabData(head(plasma30,500), samples = "CHEAR") p20 <- metabData(head(plasma20,500), samples = "Red") p.comb <- metabCombiner(p30, p20, xid = "p30", yid = "p20")

##retrieve all Q Q <- QData(p.comb, data = NULL)

##retrieve Q from p30 Q <- QData(p.comb, data = "p30")

##retrieve mean Q Q <- QData(p.comb, value = "mean")


hhabra/Combiner documentation built on Jan. 26, 2024, 10:30 p.m.