bulkPage: Logic for Bulk Data Tab

In hms-dbmi/drugseqr: GUI to Explore Single-Cell and Bulk RNA-Seq from Fastq to Pathways and Perturbations

Logic for Bulk Data Tab

Description

to be called with callModule

Usage

bulkPage(
  input,
  output,
  session,
  project_dir,
  sc_dir,
  bulk_dir,
  tx2gene_dir,
  indices_dir,
  gs_dir,
  add_bulk,
  remove_bulk
)

Arguments

input, output, session	standard shiny module boilerplate
project_dir	path to folder with project files
sc_dir	sub folder of project_dir where single-cell data is stored
bulk_dir	sub folder of project_dir where bulk data is stored
tx2gene_dir	Path to directory containing transcript to gene maps produced by load_tx2gene.
indices_dir	Path to directory containing kallisto indices and whitelists.
gs_dir	Path to directory where gene to Gene Ontology maps produced by get_genego are saved.
add_bulk	reactive that triggers modal to upload a bulk dataset
remove_bulk	reactive that triggers modal for deleting bulk datasets

Value

list with reactive new_dataset that is triggered with a new bulk dataset is added.

hms-dbmi/drugseqr documentation built on Feb. 15, 2024, 10:38 p.m.