drugsPage: Logic for Drugs Tab

In hms-dbmi/drugseqr: GUI to Explore Single-Cell and Bulk RNA-Seq from Fastq to Pathways and Perturbations

Logic for Drugs Tab

Description

Logic for Drugs Tab

Usage

drugsPage(
  input,
  output,
  session,
  project_dir,
  pert_query_dir,
  pert_signature_dir,
  tx2gene_dir
)

Arguments

input, output, session	standard shiny module boilerplate
project_dir	path to folder with project files
pert_query_dir	Path to directory where pert query results (using CMAP02/L1000 as query signature) will be downloaded as requested.
pert_signature_dir	Path to directory where pert signatures for CMAP02/L1000 will be downloaded as requested.
tx2gene_dir	Path to directory containing transcript to gene maps produced by load_tx2gene.

Value

Called with callModule to generate logic for single-cell tab.

hms-dbmi/drugseqr documentation built on Feb. 15, 2024, 10:38 p.m.