create_scseq | R Documentation |
Load kallisto/bustools quantification into a SingleCellExperiment object.
create_scseq(data_dir, tx2gene_dir, project)
data_dir |
Directory with raw and kallisto/bustools or CellRanger quantified single-cell RNA-Seq files. |
tx2gene_dir |
Path to directory containing transcript to gene maps produced by load_tx2gene. |
project |
String identifying sample. |
SingleCellExperiment
object with empty droplets removed and ambience in rowData.
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