create_scseq: Load kallisto/bustools quantification into a...

View source: R/import_scseq.R

create_scseqR Documentation

Load kallisto/bustools quantification into a SingleCellExperiment object.

Description

Load kallisto/bustools quantification into a SingleCellExperiment object.

Usage

create_scseq(data_dir, tx2gene_dir, project)

Arguments

data_dir

Directory with raw and kallisto/bustools or CellRanger quantified single-cell RNA-Seq files.

tx2gene_dir

Path to directory containing transcript to gene maps produced by load_tx2gene.

project

String identifying sample.

Value

SingleCellExperiment object with empty droplets removed and ambience in rowData.


hms-dbmi/drugseqr documentation built on Feb. 15, 2024, 10:38 p.m.