drugseqr: GUI to Explore Single-Cell and Bulk RNA-Seq from Fastq to Pathways and Perturbations

dl_pert_signature

R Documentation

Download CMAP02/L1000 pert signature from S3

Download CMAP02/L1000 pert signature from S3

dl_pert_signature(sig_path, pert_type)

`sig_path`	Path to download file to.
`pert_type`	One of `'cmap'`, `'l1000_drugs'`, or `'l1000_genes'`.

NULL. Called for side effects.

data_dir <- tempdir()
sig_path <- file.path(data_dir, '0317956-0000_PC3_1e-06M_6h.rds')
dseqr:::dl_pert_signature(sig_path, pert_type = 'cmap')

hms-dbmi/drugseqr documentation built on Oct. 26, 2024, 6:13 p.m.

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README.md

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