detect_10x_chemistry | R Documentation |
Creates samples of 10,000 reads per lane and then determins the number of reads with barcodes in agreement with the chemistry whitelist.
detect_10x_chemistry(
index_dir,
data_dir,
fqs,
techs = c("10XV2", "10XV3"),
threads = 1
)
index_dir |
Path to kallisto index. |
data_dir |
Path to folder with 10x fastq.gz files. |
fqs |
Vector of fastq file names. |
techs |
10x chemistries to check. Passed to kallisto -x argument. |
threads |
Number of threads to use. Default is 1. |
one of techs
corresponding to chemistry with most reads that agree with whitelist.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.