diff_abundance: Run differential abundance analysis
In hms-dbmi/drugseqr: GUI to Explore Single-Cell and Bulk RNA-Seq from Fastq to Pathways and Perturbations
View source: R/modules-sc-utils.R
diff_abundance R Documentation
Run differential abundance analysis
Description
Run differential abundance analysis
Usage
diff_abundance(
obj,
annot = NULL,
pairs = NULL,
orig.ident = NULL,
filter = TRUE
)
Arguments
obj
SingleCellExperiment or count matrix
orig.ident
factor of group identities with length ncol(obj)
Value
data.frame with differential abundance results calculated by
topTable
hms-dbmi/drugseqr documentation built on Feb. 15, 2024, 10:38 p.m.
R Package Documentation
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View source: R/modules-sc-utils.R
| diff_abundance | R Documentation |
Run differential abundance analysis
Description
Run differential abundance analysis
Usage
diff_abundance(
obj,
annot = NULL,
pairs = NULL,
orig.ident = NULL,
filter = TRUE
)
Arguments
obj |
|
orig.ident |
factor of group identities with length |
Value
data.frame with differential abundance results calculated by
topTable
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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