API for humayun2017/SPAGI2
SPAGI2: Identification of active signalling pathways for cross-species by integrating gene expression and human protein interaction network
| Global functions | |
|---|---|
| SPAGI2 | Man page |
| alter_pathway_elements | Man page Source code |
| alter_pathway_names | Man page Source code |
| convert_geneID_to_geneSymbol | Man page Source code |
| display_pathway_activity_score | Man page Source code |
| draw_active_pathways | Man page Source code |
| find_supported_datasets | Man page Source code |
| find_valid_geneID | Man page Source code |
| generate_homology_data | Man page Source code |
| generate_homology_gene_set | Man page Source code |
| generate_homology_pathways | Man page Source code |
| generate_pathway_molecule_homology_table | Man page Source code |
| generate_pathway_ppi_data_frame | Man page Source code |
| generate_sparse_matrix | Man page Source code |
| get_ENSEMBL_gene_list_new | Man page Source code |
| get_homology_matrix_new | Man page Source code |
| get_homology_table_new | Man page Source code |
| get_pathway_activity_score_new | Man page Source code |
| identify_active_pathway_path_new | Man page Source code |
| make_ENSEMBL_symbol_map_new | Man page Source code |
| pathway.path.new | Man page |
| preprocess_querydata_new | Man page Source code |
| rp.median.exp.4 | Man page |
| show_distribution | Man page Source code |
| spagi2 | Man page |
| spagi2-package | Man page |
| tooth.epi.E13.5 | Man page |
