show_distribution: show_distribution

In humayun2017/SPAGI2: SPAGI2: Identification of active signalling pathways for cross-species by integrating gene expression and human protein interaction network

Description

This function helps to look for the distribution for all cells / tissues based on their replicates' average value.

Usage

show_distribution(
  cell.tissue.data,
  data.format = "matrix",
  experiment.descriptor = NULL
)

Arguments

cell.tissue.data	An expression matrix with replicated column headers per-replicate. It is assumed that all query data are in RPKM/FPKM/CPM and log normalized form. Also assume that gene ids are official gene symbols. For the matrix, rows denote the genes and the columns denote the cell types or tissues. Duplicate column names are expected in this case denoting replicate samples. All the replicate samples for a specific cell or tissue should have identical column names, otherwise the experiment.descriptor parameter should be used to identify replicate samples of a specific cell type or tissue.
data.format	Format of cell.tissue.data. Default is "matrix".
experiment.descriptor	A vector corresponding to the matrix column names of cell.tissue.data, containing the cell type or tissues of each sample. The names should be identical for a specific cell or tissue. Defaults to NULL.

Details

This function helps to look for the distribution for all cells / tissues based on their replicates' average value.

Value

This function displays the distribution of each cell / tissue based on their replicates' average value. It returns null value.

Examples

show_distribution(cell.tissue.data = tooth.epi.E13.5)
abline(v=5,col="red")

humayun2017/SPAGI2 documentation built on Aug. 5, 2020, 12:06 a.m.