generate_pathway_molecule_homology_table: generate_pathway_molecule_homology_table

In humayun2017/SPAGI2: SPAGI2: Identification of active signalling pathways for cross-species by integrating gene expression and human protein interaction network

Description

This function creates a pathway molecule homology table for the two species with respect to the list of molecules of species1 by retrieving the homology table.

Usage

generate_pathway_molecule_homology_table(
  species.homology.data,
  species1.pathway.molecule
)

Arguments

species.homology.data	A list containing the homology data (i.e., homology table, homology matrix and species2 name) for the two species.
species1.pathway.molecule	A vector of pathway molecules for species1

Details

This function creates a pathway molecule homology table for the two species with respect to the list of molecules of species1 by retrieving the homology table.

Value

This function returns a homology table for the list of molecules of species1 of the two species.

Examples

human.zebrafish.homology.data<-generate_homology_data(species1 = "hsapiens", species2 = "drerio")
human.genes<-c("PAX6", "SOX2", "PROX1", "FGFR1", "BMP7", "MAPK1", "ACE2")
human.zebrafish.selected.genes.homology.table<-generate_pathway_molecule_homology_table(species.homology.data = human.zebrafish.homology.data, species1.pathway.molecule = human.genes)
human.zebrafish.selected.genes.homology.table

humayun2017/SPAGI2 documentation built on Aug. 5, 2020, 12:06 a.m.