make_ENSEMBL_symbol_map_new: make_ENSEMBL_symbol_map_new

In humayun2017/SPAGI2: SPAGI2: Identification of active signalling pathways for cross-species by integrating gene expression and human protein interaction network

Description

This helper function returns a data frame with two columns containing all gene symbols and their corresponding gene IDs for the given species

Usage

make_ENSEMBL_symbol_map_new(species, geneSymbol.toMapping, geneID.forMapping)

Arguments

species	Species name in the form 'hsapiens'
geneSymbol.toMapping	The valid gene ID names to which the user cell data will be converted, default is "external_gene_name"
geneID.forMapping	The valid gene ID names of the user cell data, default is "ensembl_gene_id"

Details

This helper function returns a data frame with two columns containing all gene symbols and their corresponding gene IDs for the given species

Value

This helper function returns a data frame with two columns containing all gene symbols and their corresponding gene IDs for the given species

Examples

human.ensembl.symbol.map<-make_ENSEMBL_symbol_map_new('hsapiens', geneSymbol.toMapping="external_gene_name", geneID.forMapping="ensembl_gene_id")
head(human.ensembl.symbol.map)

humayun2017/SPAGI2 documentation built on Aug. 5, 2020, 12:06 a.m.