generate_homology_gene_set: generate_homology_gene_set

In humayun2017/SPAGI2: SPAGI2: Identification of active signalling pathways for cross-species by integrating gene expression and human protein interaction network

Description

This function generates the homology gene set for species2 with respect to the list of genes of species1.

Usage

generate_homology_gene_set(species.homology.matix, species1.genes)

Arguments

species.homology.matix	A sparse matrix containing the homology genes information for the two species.
species1.genes	A vector containing set of genes for species1.

Details

This function generates the homology gene set for species2 with respect to the list of genes of species1.

Value

This function returns a vector of homology gene set for species2 with respect to the list of genes of species1.

Examples

human.zebrafish.homology.data<-generate_homology_data(species1 = "hsapiens", species2 = "drerio")
human.genes<-c("PAX6", "SOX2", "PROX1", "FGFR1", "BMP7", "MAPK1", "ACE2")
zebrafish.selected.homology.genes<-generate_homology_gene_set(species.homology.matix = human.zebrafish.homology.data[[2]], species1.genes = human.genes)
zebrafish.selected.homology.genes

humayun2017/SPAGI2 documentation built on Aug. 5, 2020, 12:06 a.m.