Files in humayun2017/SPAGI2
SPAGI2: Identification of active signalling pathways for cross-species by integrating gene expression and human protein interaction network
.Rbuildignore
DESCRIPTION
NAMESPACE
R/data.R
R/spagi2_master.R
README-unnamed-chunk-14-1.png
README.md
additional_file/KN.gene.list.RData
additional_file/LG.gene.list.RData
additional_file/RP.gene.list.RData
additional_file/TF.gene.list.RData
additional_file/all_FPKMs_Mouse_cleanID.RData
additional_file/all_FPKMs_human_cleanID.RData
additional_file/experiment.descriptors.humanEncode.RData
additional_file/experiment.descriptors.mouseEncode.RData
additional_file/generate_housekeeping_gene.R
additional_file/generate_pathway.R
additional_file/molecule_classification.R
additional_file/molecule_classification_model.R
additional_file/molecule_go_map.R
additional_file/pathway_cleaning.R
data/pathway.path.new.RData
data/rp.median.exp.4.RData
data/tooth.epi.E13.5.RData
man/alter_pathway_elements.Rd
man/alter_pathway_names.Rd
man/convert_geneID_to_geneSymbol.Rd
man/display_pathway_activity_score.Rd
man/draw_active_pathways.Rd
man/find_supported_datasets.Rd
man/find_valid_geneID.Rd
man/generate_homology_data.Rd
man/generate_homology_gene_set.Rd
man/generate_homology_pathways.Rd
man/generate_pathway_molecule_homology_table.Rd
man/generate_pathway_ppi_data_frame.Rd
man/generate_sparse_matrix.Rd
man/get_ENSEMBL_gene_list_new.Rd
man/get_homology_matrix_new.Rd
man/get_homology_table_new.Rd
man/get_pathway_activity_score_new.Rd
man/identify_active_pathway_path_new.Rd
man/make_ENSEMBL_symbol_map_new.Rd
man/pathway.path.new.Rd
man/preprocess_querydata_new.Rd
man/rp.median.exp.4.Rd
man/show_distribution.Rd
man/spagi2-package.Rd
man/tooth.epi.E13.5.Rd
