Man pages for humayun2017/SPAGI2
SPAGI2: Identification of active signalling pathways for cross-species by integrating gene expression and human protein interaction network
| alter_pathway_elements | alter_pathway_elements |
| alter_pathway_names | alter_pathway_names |
| convert_geneID_to_geneSymbol | convert_geneID_to_geneSymbol |
| display_pathway_activity_score | display_pathway_activity_score |
| draw_active_pathways | draw_active_pathways |
| find_supported_datasets | find_supported_datasets |
| find_valid_geneID | find_valid_geneID |
| generate_homology_data | generate_homology_data |
| generate_homology_gene_set | generate_homology_gene_set |
| generate_homology_pathways | generate_homology_pathways |
| generate_pathway_molecule_homology_table | generate_pathway_molecule_homology_table |
| generate_pathway_ppi_data_frame | generate_pathway_ppi_data_frame |
| generate_sparse_matrix | generate_sparse_matrix |
| get_ENSEMBL_gene_list_new | get_ENSEMBL_gene_list_new |
| get_homology_matrix_new | get_homology_matrix_new |
| get_homology_table_new | get_homology_table_new |
| get_pathway_activity_score_new | get_pathway_activity_score_new |
| identify_active_pathway_path_new | identify_active_pathway_path_new |
| make_ENSEMBL_symbol_map_new | make_ENSEMBL_symbol_map_new |
| pathway.path.new | Pathway path data |
| preprocess_querydata_new | preprocess_querydata_new |
| rp.median.exp.4 | Receptor proteins that are generally highly expressed in many... |
| show_distribution | show_distribution |
| spagi2-package | SPAGI2: Identification of active signalling pathways for... |
| tooth.epi.E13.5 | Data from mouse embryonic dental epithelium cell at E13.5,... |
