callMACs: call peaks based on macs2 obj: p2 object record the fragment...
In huqiwen0313/snarePip: snarePip
callMACs R Documentation
call peaks based on macs2
obj: p2 object record the fragment file paths
Description
call peaks based on macs2
obj: p2 object record the fragment file paths
Usage
callMACs(
fragmentFileDir,
output.prefix = "",
path.to.macs,
gsize,
buffer.size = 500,
out.dir = getwd(),
macs.options = "--nomodel --shift 37 --ext 73 --qval 1e-2 -B --SPMR --call-summits",
keep.simple = TRUE
)
Arguments
macs.options:
macs option for peak calling - adapted from snapATAC option
(https://github.com/r3fang/SnapATAC/blob/master)
huqiwen0313/snarePip documentation built on June 11, 2022, 5:34 p.m.
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| callMACs | R Documentation |
call peaks based on macs2 obj: p2 object record the fragment file paths
Description
call peaks based on macs2 obj: p2 object record the fragment file paths
Usage
callMACs( fragmentFileDir, output.prefix = "", path.to.macs, gsize, buffer.size = 500, out.dir = getwd(), macs.options = "--nomodel --shift 37 --ext 73 --qval 1e-2 -B --SPMR --call-summits", keep.simple = TRUE )
Arguments
macs.options: |
macs option for peak calling - adapted from snapATAC option (https://github.com/r3fang/SnapATAC/blob/master) |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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