enrichMotifsDAR: identify overrepresentative motifs in DAR regions for each...
In huqiwen0313/snarePip: snarePip
enrichMotifsDAR R Documentation
identify overrepresentative motifs in DAR regions for each cluster
Description
identify overrepresentative motifs in DAR regions for each cluster
Usage
enrichMotifsDAR(
obj,
sampleMethod = "match.GC",
PvalueCutoff = 0.05,
peakCutoff = 500,
nsample = 10000,
genome = "BSgenome.Hsapiens.NCBI.GRCh38",
use.pvalues = FALSE
)
Arguments
obj
pagoda2 object
PvalueCutoff
pvalue cutoff for significant DAR regions
huqiwen0313/snarePip documentation built on June 11, 2022, 5:34 p.m.
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| enrichMotifsDAR | R Documentation |
identify overrepresentative motifs in DAR regions for each cluster
Description
identify overrepresentative motifs in DAR regions for each cluster
Usage
enrichMotifsDAR( obj, sampleMethod = "match.GC", PvalueCutoff = 0.05, peakCutoff = 500, nsample = 10000, genome = "BSgenome.Hsapiens.NCBI.GRCh38", use.pvalues = FALSE )
Arguments
obj |
pagoda2 object |
PvalueCutoff |
pvalue cutoff for significant DAR regions |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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