callMACsCluster: call peaks based on assigned cell clusters

In huqiwen0313/snarePip: snarePip

call peaks based on assigned cell clusters

Description

call peaks based on assigned cell clusters

Usage

callMACsCluster(
  obj,
  clusters = NULL,
  path.to.macs,
  gsize,
  buffer.size = 500,
  out.dir = getwd(),
  macs.options = "--nomodel --shift 37 --ext 73 --qval 1e-2 -B --SPMR --call-summits",
  ncores = 1,
  keep.simple = TRUE,
  min.cells = 10,
  includeOthers = TRUE
)

Arguments

obj	p2 object
clusters	cell annotation

huqiwen0313/snarePip documentation built on June 11, 2022, 5:34 p.m.