fragmentOverlapPeaks: Caculate the number of fragment that overlapped with peak...
In huqiwen0313/snarePip: snarePip
fragmentOverlapPeaks R Documentation
Caculate the number of fragment that overlapped with peak region and return summary statistics
(median_total_usable_fragments_per_cell, median_unique_fragments_per_cell)
Description
Caculate the number of fragment that overlapped with peak region and return summary statistics
(median_total_usable_fragments_per_cell, median_unique_fragments_per_cell)
Usage
fragmentOverlapPeaks(obj, plot = T, fitModel = FALSE, n.cores = 10)
Arguments
obj
an class object (default pagoda2)
fitModel
Whether to estimate fragments assuming fragment contamination rate is 0.02
Value
plot and summary statistics
huqiwen0313/snarePip documentation built on June 11, 2022, 5:34 p.m.
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| fragmentOverlapPeaks | R Documentation |
Caculate the number of fragment that overlapped with peak region and return summary statistics (median_total_usable_fragments_per_cell, median_unique_fragments_per_cell)
Description
Caculate the number of fragment that overlapped with peak region and return summary statistics (median_total_usable_fragments_per_cell, median_unique_fragments_per_cell)
Usage
fragmentOverlapPeaks(obj, plot = T, fitModel = FALSE, n.cores = 10)
Arguments
obj |
an class object (default pagoda2) |
fitModel |
Whether to estimate fragments assuming fragment contamination rate is 0.02 |
Value
plot and summary statistics
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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