idenDAR: identify differential accessible region based on pagoda...
In huqiwen0313/snarePip: snarePip
idenDAR R Documentation
identify differential accessible region based on pagoda object
Description
identify differential accessible region based on pagoda object
Usage
idenDAR(
obj,
clusters,
neg = NULL,
method = c("knn", "random"),
bcv = 0.1,
test.method = c("exactTest", "lrt", "qlf"),
n.cores = 2,
bgCellnumber = NULL
)
Arguments
obj
pagoda object
clusters
factor contain cluster information for each cell
bgCellnumer
background cell number
huqiwen0313/snarePip documentation built on June 11, 2022, 5:34 p.m.
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| idenDAR | R Documentation |
identify differential accessible region based on pagoda object
Description
identify differential accessible region based on pagoda object
Usage
idenDAR(
obj,
clusters,
neg = NULL,
method = c("knn", "random"),
bcv = 0.1,
test.method = c("exactTest", "lrt", "qlf"),
n.cores = 2,
bgCellnumber = NULL
)
Arguments
obj |
pagoda object |
clusters |
factor contain cluster information for each cell |
bgCellnumer |
background cell number |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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