annotateGraph: Produce annotated gene graph where vertices have scores...

Description Usage Arguments Value Examples

View source: R/annotate.R

Description

annotateGraph takes as inputs a gene heat hashtable and a gene graph, and annotates the graph with gene heats that have been calculated by the scoring function. It then returns an AGG (annotated gene graph).

Usage

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annotateGraph(gH, gG, silent = FALSE, writeLog = TRUE)

Arguments

gH

List of genes and their associated score (mutational frequncy of mutSigCV value)

gG

gene graph

silent

Controls whether output to console should be suppressed. FALSE by default.

writeLog

Controls whether writing the result to the global logfile is enabled. TRUE by default.

Value

AGG object with annotated vertices

Examples

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## Not run: 
    annotateGraph(gH, gG)

## End(Not run)

hyginn/ekplektoR documentation built on May 17, 2017, 12:08 a.m.