devCNA.txt: CNA data.
In hyginn/ekplektoR: Network Analysis for Cell- and Systems Biology
Description
Format
Source
Examples
Description
A file containing TCAG OV carcinoma CNAs for 16
genes.
Format
A tab separated text file with 16 rows and 582 columns, most of
which represent individual cancer tissue samples:
- Gene Symbol
HGNC gene symbol
- Locus ID
Entrez Gene ID
- Cytoband
Chromosome, arm and band information
- <Sample Barcode>...
497 tissue sample barcodes
...
Source
https://tcga-data.nci.nih.gov/docs/publications/ov_2011/
Examples
1
2
3
4
5
6
## Not run:
system.file("extdata", "devCNA.txt", package="rete")
fPath <- system.file("extdata", "devCNA.txt", package="rete")
myCNA <- read.delim(fPath, stringsAsFactors = FALSE)
## End(Not run)
hyginn/ekplektoR documentation built on May 17, 2019, 9:16 p.m.
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Description Format Source Examples
Description
A file containing TCAG OV carcinoma CNAs for 16 genes.
Format
A tab separated text file with 16 rows and 582 columns, most of which represent individual cancer tissue samples:
- Gene Symbol
HGNC gene symbol
- Locus ID
Entrez Gene ID
- Cytoband
Chromosome, arm and band information
- <Sample Barcode>...
497 tissue sample barcodes
...
Source
https://tcga-data.nci.nih.gov/docs/publications/ov_2011/
Examples
1 2 3 4 5 6 | ## Not run:
system.file("extdata", "devCNA.txt", package="rete")
fPath <- system.file("extdata", "devCNA.txt", package="rete")
myCNA <- read.delim(fPath, stringsAsFactors = FALSE)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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