Description Usage Arguments Examples
View source: R/importFilterHypermutators.R
importFilterHypermutators
identifies the number of SNV and CNA
mutations for each sample and removes the samples from rSNV and rCNA
datasets. Default threshold for removal is 400 mutations per sample.
1 2 3 |
rSNVFileIn |
A vector of local file names of rSNV |
rCNAFileIn |
A vector of local file names of rCNA |
dOut |
Directory to store output, defaults to getwd(). |
xS |
Mutation threshold. 400 by default. |
silent |
Controls whether output to console should be suppressed. FALSE by default. |
writeLog |
Controls whether writing the result to the global logfile is enabled. TRUE by default. |
writeDetailedLog |
Flag for extra details about log. TRUE by default. |
1 2 3 4 | ## Not run:
importFilterHypermutators(rSNVFileIn, rCNAFileIn, dOut, xS)
## End(Not run)
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