combineSNV_CNA: Combine mutation data from CNA and SNV

Description Usage Arguments Details Value gX files Examples

View source: R/combineSNV_CNA.R

Description

combineSNV_CNA loads the vector of preprocessed dataset from filtered CNA or SNV files, creates hash keys corresponding to the input file type, combine the corresponding mutation count to each gene and save to a gX format file as output file.

Usage

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combineSNV_CNA(fNameSNV, fNameCNA, fgX = "gX.rds", silent = FALSE,
  writeLog = TRUE)

Arguments

fNameSNV

A vector of path of fully qualifed filenames of CNA rds files.

fNameCNA

A vector of path of fully qualified file Names of SNV rds files.

fgX

The fully qualified filename/path of a gX output file, by default is gX.rds.

silent

Boolean option for writing combining process information to console, FALSE by default.

writeLog

Boolean option for log results, TRUE by default.

Details

Details.

Value

N/A. This function is normally invoked for its side effect of saving a gX file.

gX files

gX rds files contain data of SNV and CNA combined for each gene as one object, sorted per gene.

Examples

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## Not run: combineSNV_CNA(fNameSNV="SNV.rds", fNameCNA="CNA.rds", fgX="data.rds")

hyginn/ekplektoR documentation built on May 17, 2017, 12:08 a.m.