plotTD.HM: Plots results of testTDConditions

In iaaka/visutils: QC, analyse and visualize visium

Plots results of testTDConditions

Description

as three heatmaps: two shows mean per-condition spatial feature distribution and one show log fold change

Usage

plotTD.HM(
  comp,
  cond.titles = c("cond1", "cond2"),
  order = NULL,
  l2fc.zlim = NULL,
  feature.class = NULL,
  log = TRUE,
  col = hcl.colors(100, "YlOrRd", rev = TRUE),
  fdr.thrs = c(`*` = 0.05, . = 0.2),
  feature.names.map = NULL
)

Arguments

comp	list, output of testTDConditions
cond.titles	condition titles to be plot on top of heatmaps
order	feature order, NULL (default) for no reordering
l2fc.zlim	range to trim log fold change
feature.class	list (or matrix of columns) with feature annotations to be shown by color
fdr.thrs	named numerical list used to show levels of significance on log fold change plot, default is c('*'=0.05,'.'=0.2)
feature.names.map	named vector that maps feature ids used in comp to display names
cols	cols to be used for condition heatmaps

iaaka/visutils documentation built on Jan. 17, 2025, 11:29 p.m.