plotVisiumHex: Plot Visium as honeycombs

In iaaka/visutils: QC, analyse and visualize visium

Plot Visium as honeycombs

Description

Normally this function shouldn't be called directly. Use plotVisium instead

Usage

plotVisiumHex(
  xy,
  cex = 1,
  col = "red",
  border = col,
  xlab = "Cols",
  ylab = "Rows",
  xlim = NULL,
  ylim = NULL,
  hexstep = 0.25,
  transpose = FALSE,
  ...
)

Arguments

xy	seu@images[.]@coordinates
cex	spot size
col	spot color
border	color of spot border (by default)
xlim, ylim, xlab, ylab	parameters of plot function
hexstep	size of spot hex, do not change unless you know what you are doing
transpose	logical, whether to transpose the figure
...	other parameters to be passed to plot function

Value

data.frame with spot coordinates

iaaka/visutils documentation built on Jan. 17, 2025, 11:29 p.m.