segments.alphabets: Alphabets of TCR and Ig gene segments.
In imminfo/tcr: Advanced Data Analysis of Immune Receptor Repertoires
Description
Usage
Format
Examples
Description
Character vector with names for segments. With tcR we provided alphabets for all alpha, beta,
gamma and delta chains gene segments.
Usage
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HUMAN_TRAV
HUMAN_TRAJ
HUMAN_TRBV
HUMAN_TRBD
HUMAN_TRBJ
HUMAN_TRBV_MITCR
HUMAN_TRBV_ALS
HUMAN_TRGV
HUMAN_TRGJ
HUMAN_TRDV
HUMAN_TRDD
HUMAN_TRDJ
MOUSE_TRBV
MOUSE_TRBJ
MOUSE_TRAV
MOUSE_TRAJ
MOUSE_IGKV
MOUSE_IGKJ
MOUSE_IGHV
MOUSE_IGHD
MOUSE_IGHJ
MACMUL_TRBV
MACMUL_TRBJ
HUMAN_IGHV
HUMAN_IGHD
HUMAN_IGHJ
HUMAN_IGLV
HUMAN_IGLJ
MOUSE_IGLJ
MOUSE_IGLV
Format
Each <SPECIES>_<GENES> is a character vector. <SPECIES> is an identifier of species, <GENES> is concatenated three
identifiers of cell type ("TR**" for TCR, "IG**" for Ig), chain (e.g., "**A*" for alpha chains) and gene segment ("***V" for V(ariable) gene segment,
"***J" for J(oining) gene segment, "***D" for D(iversity) gene segment).
Examples
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## Not run:
HUMAN_TRBV[1] # => "TRBV10-1"
## End(Not run)
imminfo/tcr documentation built on June 13, 2020, 7:01 a.m.
R Package Documentation
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Format Examples
Description
Character vector with names for segments. With tcR we provided alphabets for all alpha, beta,
gamma and delta chains gene segments.
Usage
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 | HUMAN_TRAV
HUMAN_TRAJ
HUMAN_TRBV
HUMAN_TRBD
HUMAN_TRBJ
HUMAN_TRBV_MITCR
HUMAN_TRBV_ALS
HUMAN_TRGV
HUMAN_TRGJ
HUMAN_TRDV
HUMAN_TRDD
HUMAN_TRDJ
MOUSE_TRBV
MOUSE_TRBJ
MOUSE_TRAV
MOUSE_TRAJ
MOUSE_IGKV
MOUSE_IGKJ
MOUSE_IGHV
MOUSE_IGHD
MOUSE_IGHJ
MACMUL_TRBV
MACMUL_TRBJ
HUMAN_IGHV
HUMAN_IGHD
HUMAN_IGHJ
HUMAN_IGLV
HUMAN_IGLJ
MOUSE_IGLJ
MOUSE_IGLV
|
Format
Each <SPECIES>_<GENES> is a character vector. <SPECIES> is an identifier of species, <GENES> is concatenated three
identifiers of cell type ("TR**" for TCR, "IG**" for Ig), chain (e.g., "**A*" for alpha chains) and gene segment ("***V" for V(ariable) gene segment,
"***J" for J(oining) gene segment, "***D" for D(iversity) gene segment).
Examples
1 2 3 4 | ## Not run:
HUMAN_TRBV[1] # => "TRBV10-1"
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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