Man pages for irilenia/baerhunter
Detection and Analysis of Expressed Intergenic Elements in Bacterial RNA-seq Data
| count_features | count_features function |
| differential_expression | Differential gene expression analysis |
| feature_file_editor | Prediction and annotation of sRNAs and UTRs from RNA-seq data |
| find_strandedness | find_strandedness function |
| major_features | Extract major features from the annotation file |
| make_saf | SAF converter |
| peak_analysis | Peak checking for the second coverage threshold and width. |
| peak_union_calc | Peak union calculation |
| read_annotation_file | read_annotation_file function |
| sRNA_calc | sRNA prediction |
| strand_feature_editor | Strand annotation |
| tpm_flag_filtering | Filtering features by a target flag. |
| tpm_flagging | Flagging features depending on TPM value profile |
| tpm_normalisation | TPM calculator |
| UTR_calc | UTR prediction |
